Publikationen

Original Publikationen

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 2013

Broad host range vectors for expression of proteins with (Twin-) Strep-tag, His-tag and engineered, export optimized yellow fluorescent protein.

Dammeyer T, Timmis KN, Tinnefeld P.

Microb Cell Fact. 2013 May 20;12:49.

Adaptation of the hydrocarbonoclastic bacterium Alcanivorax borkumensis SK2 to alkanes and toxic organic compounds: a physiological and transcriptomic approach.

Naether DJ, Slawtschew S, Stasik S, Engel M, Olzog M, Wick LY, Timmis KN, Heipieper HJ.

Appl Environ Microbiol. 2013 Jul;79(14):4282-93.

Tight coupling of polymerization and depolymerization of polyhydroxyalkanoates ensures efficient management of carbon resources in Pseudomonas putida.

Arias S, Bassas-Galia M, Molinari G, Timmis KN.

Microb Biotechnol. 2013 Sep;6(5):551-63.

Microbial Biotechnology: evolution of your premier journal.

Timmis K, Ramos JL, Rosenberg M, Verstraete W, de Vos W.

Microb Biotechnol. 2013 Jan;6(1):1-2.

Impact of a simulated oil spill on benthic phototrophs and nitrogen-fixing bacteria in mudflat mesocosms.

Chronopoulou PM, Fahy A, Coulon F, Païssé S, Goñi-Urriza M, Peperzak L, Acuña Alvarez L, McKew BA, Lawson T, Timmis KN, Duran R, Underwood GJ, McGenity TJ.

Environ Microbiol. 2013 Jan;15(1):242-52.

2012

Central role of dynamic tidal biofilms dominated by aerobic hydrocarbonoclastic bacteria and diatoms in the biodegradation of hydrocarbons in coastal mudflats.

Coulon F, Chronopoulou PM, Fahy A, Païssé S, Goñi-Urriza M, Peperzak L, Acuña Alvarez L, McKew BA, Brussaard CP, Underwood GJ, Timmis KN, Duran R, McGenity TJ.

Appl Environ Microbiol. 2012 May;78(10):3638-48.

Plant original Massilia isolates producing polyhydroxybutyrate, including one exhibiting high yields from glycerol.

Bassas-Galia M, Nogales B, Arias S, Rohde M, Timmis KN, Molinari G.

J Appl Microbiol. 2012 Mar;112(3):443-54.

2011

Transcriptional profiling of the marine oil-degrading bacterium Alcanivorax borkumensis during growth on n-alkanes.

Sabirova JS, Becker A, Lünsdorf H, Nicaud JM, Timmis KN, Golyshin PN.

FEMS Microbiol Lett. 2011 Jun;319(2):160-8.

Efficient production of soluble recombinant single chain Fv fragments by a Pseudomonas putida strain KT2440 cell factory.

Dammeyer T, Steinwand M, Krüger SC, Dübel S, Hust M, Timmis KN.

Microb Cell Fact. 2011 Feb 21;10:11.

The 'LipoYeasts' project: using the oleaginous yeast Yarrowia lipolytica in combination with specific bacterial genes for the bioconversion of lipids, fats and oils into high-value products.

Sabirova JS, Haddouche R, Van Bogaert I, Mulaa F, Verstraete W, Timmis K, Schmidt-Dannert C, Nicaud J, Soetaert W.

Microb Biotechnol. 2011 Jan;4(1):47-54.

2010

Novel hybrid esterase-haloacid dehalogenase enzyme.

Beloqui A, Polaina J, Vieites JM, Reyes-Duarte D, Torres R, Golyshina OV, Chernikova TN, Waliczek A, Aharoni A, Yakimov MM, Timmis KN, Golyshin PN, Ferrer M.

Chembiochem. 2010 Sep 24;11(14):1975-8.

Halophilic archaea in the human intestinal mucosa.

Oxley AP, Lanfranconi MP, Würdemann D, Ott S, Schreiber S, McGenity TJ, Timmis KN, Nogales B.

Environ Microbiol. 2010 Sep;12(9):2398-410.

Effect of the earthworms Lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil.

Nechitaylo TY, Yakimov MM, Godinho M, Timmis KN, Belogolova E, Byzov BA, Kurakov AV, Jones DL, Golyshin PN.

Microb Ecol. 2010 Apr;59(3):574-87.

2009

Characterization of marine isoprene-degrading communities.

Alvarez LA, Exton DA, Timmis KN, Suggett DJ, McGenity TJ.

Environ Microbiol. 2009 Dec;11(12):3280-91.

Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov.

Golyshina OV, Yakimov MM, Lünsdorf H, Ferrer M, Nimtz M, Timmis KN, Wray V, Tindall BJ, Golyshin PN.

Int J Syst Evol Microbiol. 2009 Nov;59(Pt 11):2815-23.

Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn's disease, and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov.

Würdemann D, Tindall BJ, Pukall R, Lünsdorf H, Strömpl C, Namuth T, Nahrstedt H, Wos-Oxley M, Ott S, Schreiber S, Timmis KN, Oxley AP.

Int J Syst Evol Microbiol. 2009 Jun;59(Pt 6):1405-15.

Microbial consortia in mesocosm bioremediation trial using oil sorbents, slow-release fertilizer and bioaugmentation.

Gertler C, Gerdts G, Timmis KN, Golyshin PN.

FEMS Microbiol Ecol. 2009 Aug;69(2):288-300.

'Candidatus Lumbricincola', a novel lineage of uncultured Mollicutes from earthworms of family Lumbricidae.

Nechitaylo TY, Timmis KN, Golyshin PN.

Environ Microbiol. 2009 Apr;11(4):1016-26.

Bacterial consortium proteomics under 4-chlorosalicylate carbon-limiting conditions.

Bobadilla Fazzini RA, Bielecka A, Quintas AK, Golyshin PN, Preto MJ, Timmis KN, dos Santos VA.

Proteomics. 2009 Apr;9(8):2273-85.

Populations of heavy fuel oil-degrading marine microbial community in presence of oil sorbent materials.

Gertler C, Gerdts G, Timmis KN, Yakimov MM, Golyshin PN.

J Appl Microbiol. 2009 Aug;107(2):590-605.

Human biome biotechnology and the personalization of odour profiles.

Timmis K.

Microb Biotechnol. 2009 Mar;2(2):150-2.

Mixed aerobic and anaerobic microbial communities in benzene-contaminated groundwater.

Aburto A, Fahy A, Coulon F, Lethbridge G, Timmis KN, Ball AS, McGenity TJ.

J Appl Microbiol. 2009 Jan;106(1):317-28.

2008

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.

Puchałka J, Oberhardt MA, Godinho M, Bielecka A, Regenhardt D, Timmis KN, Papin JA, Martins dos Santos VA.

PLoS Comput Biol. 2008 Oct;4(10):e1000210.

Metagenomics for mining new genetic resources of microbial communities.

Ferrer M, Beloqui A, Timmis KN, Golyshin PN.

J Mol Microbiol Biotechnol. 2009;16(1-2):109-23.

Fungi and inflammatory bowel diseases: Alterations of composition and diversity.

Ott SJ, Kühbacher T, Musfeldt M, Rosenstiel P, Hellmig S, Rehman A, Drews O, Weichert W, Timmis KN, Schreiber S.

Scand J Gastroenterol. 2008;43(7):831-41.

A purple acidophilic di-ferric DNA ligase from Ferroplasma.

Ferrer M, Golyshina OV, Beloqui A, Böttger LH, Andreu JM, Polaina J, De Lacey AL, Trautwein AX, Timmis KN, Golyshin PN.

Proc Natl Acad Sci U S A. 2008 Jul 1;105(26):8878-83.

Niche-specificity factors of a marine oil-degrading bacterium Alcanivorax borkumensis SK2.

Sabirova JS, Chernikova TN, Timmis KN, Golyshin PN.

FEMS Microbiol Lett. 2008 Aug;285(1):89-96.

Isolation of alkali-tolerant benzene-degrading bacteria from a contaminated aquifer.

Fahy A, Ball AS, Lethbridge G, Timmis KN, McGenity TJ.

Lett Appl Microbiol. 2008 Jul;47(1):60-6.

Diversity of Bacillus-like organisms isolated from deep-sea hypersaline anoxic sediments.

Sass AM, McKew BA, Sass H, Fichtel J, Timmis KN, McGenity TJ.

Saline Systems. 2008 Jun 9;4:8.

High benzene concentrations can favour Gram-positive bacteria in groundwaters from a contaminated aquifer.

Fahy A, Ball AS, Lethbridge G, McGenity TJ, Timmis KN.

FEMS Microbiol Ecol. 2008 Sep;65(3):526-33.

2007

Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea.

Yakimov MM, La Cono V, Denaro R, D'Auria G, Decembrini F, Timmis KN, Golyshin PN, Giuliano L.

ISME J. 2007 Dec;1(8):743-55.

Characterization and role of a metalloprotease induced by chitin in Serratia sp. KCK.

Kim HS, Golyshin PN, Timmis KN.

J Ind Microbiol Biotechnol. 2007 Nov;34(11):715-21.

Widespread capacity to metabolize polychlorinated biphenyls by diverse microbial communities in soils with no significant exposure to PCB contamination.

Macedo AJ, Timmis KN, Abraham WR.

Environ Microbiol. 2007 Aug;9(8):1890-7.

Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria.

McKew BA, Coulon F, Yakimov MM, Denaro R, Genovese M, Smith CJ, Osborn AM, Timmis KN, McGenity TJ.

Environ Microbiol. 2007 Jun;9(6):1562-71.

Obligate oil-degrading marine bacteria.

Yakimov MM, Timmis KN, Golyshin PN.

Curr Opin Biotechnol. 2007 Jun;18(3):257-66.

Characterization of a chitinolytic enzyme from Serratia sp. KCK isolated from kimchi juice.

Kim HS, Timmis KN, Golyshin PN.

Appl Microbiol Biotechnol. 2007 Jul;75(6):1275-83.

Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies.

Ballerstedt H, Volkers RJ, Mars AE, Hallsworth JE, dos Santos VA, Puchalka J, van Duuren J, Eggink G, Timmis KN, de Bont JA, Wery J.

Appl Microbiol Biotechnol. 2007 Jul;75(5):1133-42.

Limits of life in MgCl2-containing environments: chaotropicity defines the window.

Hallsworth JE, Yakimov MM, Golyshin PN, Gillion JL, D'Auria G, de Lima Alves F, La Cono V, Genovese M, McKew BA, Hayes SL, Harris G, Giuliano L, Timmis KN, McGenity TJ.

Environ Microbiol. 2007 Mar;9(3):801-13.

Shift from acetoclastic to H2-dependent methanogenesis in a west Siberian peat bog at low pH values and isolation of an acidophilic Methanobacterium strain.

Kotsyurbenko OR, Friedrich MW, Simankova MV, Nozhevnikova AN, Golyshin PN, Timmis KN, Conrad R.

Appl Environ Microbiol. 2007 Apr;73(7):2344-8.

Biochemical and structural features of a novel cyclodextrinase from cow rumen metagenome.

Ferrer M, Beloqui A, Golyshina OV, Plou FJ, Neef A, Chernikova TN, Fernández-Arrojo L, Ghazi I, Ballesteros A, Elborough K, Timmis KN, Golyshin PN.

Biotechnol J. 2007 Feb;2(2):207-13.

Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters.

Coulon F, McKew BA, Osborn AM, McGenity TJ, Timmis KN.

Environ Microbiol. 2007 Jan;9(1):177-86.

Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK.

McKew BA, Coulon F, Osborn AM, Timmis KN, McGenity TJ.

Environ Microbiol. 2007 Jan;9(1):165-76.

The cellular machinery of Ferroplasma acidiphilum is iron-protein-dominated.

Ferrer M, Golyshina OV, Beloqui A, Golyshin PN, Timmis KN.

Nature. 2007 Jan 4;445(7123):91-4.

Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria.

Kalscheuer R, Stöveken T, Malkus U, Reichelt R, Golyshin PN, Sabirova JS, Ferrer M, Timmis KN, Steinbüchel A.

J Bacteriol. 2007 Feb;189(3):918-28.

Dynamics of reductive genome evolution in mitochondria and obligate intracellular microbes.

Khachane AN, Timmis KN, Martins dos Santos VA.

Mol Biol Evol. 2007 Feb;24(2):449-56.

Major work: Handbook of Hydrocarbon and Lipid Microbiology