Ayala-García P, Moreno-de Castro N, Jiménez-Guerrero I, Müsken M, Arce-Rodríguez A, Pérez-Montaño F & Borrero-de Acuña JM. (2024). Isolation, quantification, and visualization of extracellular membrane vesicles in Rhizobia Under Free-Living Conditions. In: Medina, C., López-Baena, F.J. (eds) Host-Pathogen Interactions. Methods in Molecular Biology, vol 2751. Humana, New York, NY. ISBN 978-1-0716-3616-9
Kretschmer M, Müller J, Henke P, Otto V, Arce-Rodriguez A, Müsken M, Jahn D, Borrero-de Acuña JM, Neumann-Schaal M & Wegner A. (2023) Isolation and quantification of bacterial membrane vesicles for quantitative metabolic studies using mammalian cell cultures. Cells 12(23): 2674
Pankratz D, Gomez NO, Nielsen A, Mustafayeva A, Gür M, Arce-Rodríguez F, Nikel PI, Häussler S & Arce-Rodríguez A. (2023) An expanded CRISPR/Cas9-assisted recombineering toolkit enables engineering of genetically-intractable Pseudomonas aeruginosa isolates. Nat Protoc 18(11):3253-3288
Arce-Rodríguez A, Libby E, Castellón E, Avendaño R, Cambronero JC, Vargas M, Pieper DH, Bertilsson S, Chavarría M & Puente-Sánchez F. (2023) Out of the blue: the independent activity of sulfur-oxidizers and diatoms mediate the sudden color shift of a tropical river. Environ Microbiome 18(1):6
Hamed MM, Abdelsamie AS, Rox K, Schütz C, Kany AM, Röhrig T, Schmelz S, Blankenfeldt W, Arce‐Rodriguez A, … & Martin Empting. (2023) Towards Translation of PqsR Inverse Agonists: From In Vitro Efficacy Optimization to In Vivo Proof‐of‐Principle. Adv Sci 10(5):e2204443.
Amils R, Escudero C, Oggerin M, Puente-Sánchez F, Arce-Rodríguez A, … & Parro V. (2022) Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt. Environ Microbiol 25(2):428-453
Jeske A, Arce-Rodríguez A, Thöming J, Tomasch J & Häussler S. (2022) Evolution of biofilm-adapted gene expression profiles in lasR-deficient clinical Pseudomonas aeruginosa isolates. NPJ Biofilms Microbiomes 8(1): 6
Arce-Rodríguez A, Pankratz D, Preusse M, Nikel PI & Häussler S. (2022) Dual effect: High NADH levels contribute to efflux-mediated antibiotic resistance but drive ROS lethality. mBio 13(1): e02434-21
Arce-Rodríguez A, Benedetti I, Borrero-de Acuña JM, Silva-Rocha R & de Lorenzo V. (2021) Standardization of inducer-activated broad host range expression modules: debugging and refactoring an alkane-responsive AlkS/PalkB device. Synth Biol (Oxf) 6(1)
Arce-Rodríguez A, Nikel PI, Calles B, Chavarría M, Platero R, Krell T & de Lorenzo V. (2021) Low CyaA expression and anti-cooperative binding of cAMP to CRP frames the scope of the cognate regulon of Pseudomonas putida. Environ Microbiol 23(3): 1732-1749.
Rojas-Gätjens D, Arce-Rodríguez A, Puente-Sánchez F, Avendaño R, Libby E, Mora-Amador R, Rojas-Jimenez K, Fuentes-Schweizer P, Pieper DH & Chavarría M. (2021) Temperature and elemental sulfur shape microbial communities in two extremely acidic aquatic volcanic environments. Extremophiles 25(1): 85-99
Donnert M, Elsheikh S, Arce-Rodríguez A, Pawar V, Braubach P, Jonigk D, Haverich A, Weiss S, Müsken M & Häussler S. (2020) Targeting bioenergetics is key to counteracting the drug-tolerant state of biofilm-grown bacteria. PLoS pathogens 16(12):e1009126
Arce-Rodríguez A, Puente-Sánchez F, Avendaño R, Libby E, Mora-Amador R, Rojas-Jimenez K, Martinez M, Pieper DH & Chavarría M. (2020) Microbial Community Structure Along a Horizontal Oxygen Gradient in a Costa Rican Volcanic Influenced Acid Rock Drainage System. Microb Ecol 80(4):793-808
Rojas-Gätjens D, Arce-Rodríguez A, Puente-Sánchez F, Avendaño R, Libby E, Conejo-Barboza G, Mora-Amador R, Rojas-Jimenez K, Martinez M, Pieper DH & Chavarría M. (2020) Rapid shift in microbial community structure in a neutral hydrothermal hot spring from Costa Rica. bioRxiv. doi: doi.org/10.1101/2020.11.23.395137
Kordes A, Grahl N, Koska M, Preusse M, Arce-Rodríguez A, Abraham WR, Kaever V & Häussler S. (2019) Establishment of an induced memory response in Pseudomonas aeruginosa during infection of a eukaryotic host. ISME J 13(8):2018-2030
Arce-Rodríguez A, Volke DC, Bense S, Häussler S & Nikel PI. (2019) Non-invasive, ratiometric determination of intracellular pH in Pseudomonas species using a novel genetically-encoded biosensor. Microb Biotechnol. 12(4):799-813
Arce-Rodríguez A, Puente-Sánchez F, Avendaño R, Martínez-Cruz M, de Moor JM, Pieper DH & Chavarría M. (2018) Thermoplasmatales and sulfur-oxidizing bacteria dominate the microbial community at the surface water of a CO2-rich hydrothermal spring located in Tenorio Volcano National Park, Costa Rica. Extremophiles. 23(2):177-187
Puente-Sánchez F, Arce-Rodríguez A, Oggerin M, García-Villadangos M, Moreno-Paz M, Blanco Y, Rodríguez N, Bird L, Lincoln SA, Tornos F, Prieto-Ballesteros O, Freeman KH, Pieper DH, Timmis KN, Amils R & Parro V. (2018) Viable cyanobacteria in the deep continental subsurface. Proc Natl Acad Sci USA 115(42):10702–10707
Arce-Rodríguez A, Puente-Sánchez F, Avendaño R, Libby E, Rojas L, Cambronero JC, Pieper DH, Timmis KN & Chavarría M. (2017) Pristine but metal-rich Río Sucio (Dirty River) is dominated by Gallionella and other iron-sulfur oxidizing microbes. Extremophiles 21(2):235-243
Puente-Sánchez F, Pieper DH & Arce-Rodríguez A. (2016) Draft genome sequence of the deep-subsurface actinobacterium Tessaracoccus lapidicaptus IPBSL-7 T. Genome Announc 4(5):e01078-16
Arce-Rodríguez A, Calles B, Nikel PI & de Lorenzo V. (2015) The RNA chaperone Hfq enables the environmental stress tolerance super-phenotype of Pseudomonas putida. Environ Microbiol. 18(10):3309-3326
Amils R, Fernandez-Remolar D & the IPBSL team members. (2014) Rio Tinto: a geochemical and mineralogical terrestrial analogue of Mars. Life (Basel) 4(3): 511–534.
Arce-Rodríguez A, Montero-Carmona W & Gätjens-Boniche O. (2014) Detection of Cymbidium mosaic virus (CymMV) and Odontoglossum ringspot virus (ORSV) in orchids grown in Costa Rica. Biotecnia 16(2): 3-10.
Silva-Rocha R, Martínez-García E, Calles B, Chavarría M, Arce-Rodríguez A., de las Heras A, Páez-Espino AD, Durante-Rodríguez G, Kim J, Nikel PI, Platero R & de Lorenzo V. (2013) The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucl Acids Res 41(D1): D666–D675.
Arce-Rodríguez A, Durante-Rodríguez G, Platero R, Calles B, Krell T & de Lorenzo V. (2012) The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP. Environ Microbiol 14: 702-713.
Milanesio P, Arce-Rodríguez A, Muñoz S, Calles B & de Lorenzo V. (2011) Regulatory exaptation of the catabolite repression protein (Crp)–cAMP system in Pseudomonas putida. Environ Microbiol 13: 324–339.