Zangenehzadeh, S., Agocs, E., Schröder, F., Amroun, N., Biedendieck, R., Jahn, D., Günther, A., Zheng, L., Roth, B., Johannes, H.-H. & Kowalsky, W. (2024)
Polarization modulated spectroscopic ellipsometry-based surface plasmon resonance biosensor for E. coli K12 detection.
Sci Rep. in press.
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Zimbelmann, S., Hintmann, M., Baumann, M., Jahn, D., Biedendieck, R. & Emde, B. (2024)
Selective Lethal Impact of Blue Laser Radiation Compared to High-Power LED Irradiation on Naturally Grown Biofouling in the Context of Underwater Biofouling Cleaning.
Procedia CIRP. 124, 696–699
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Wichmann, J., Staar, M., Kubiak, M., Solarczek, J., Mayer, J., Jahn, D., Kampen, I., Schilde, C., Schallmey, A. & Biedendieck, R. (2024)
Correlation of structure and properties of enzyme crystals in consideration of downstream processing and formulation.
In "Dispersity, Structure and Phase Changes of Proteins and Bio Agglomerates in Biotechnological Processes", Kwade, A. and Kampen, I. (Eds.) Springer Nature, 1-57
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Brune, S.E., Jahn, D., Krull, R. & Biedendieck, R. (2024)
Production, purification, and characterization of recombinant β-lactoglobulin variants.
In "Dispersity, Structure and Phase Changes of Proteins and Bio Agglomerates in Biotechnological Processes", Kwade, A. and Kampen, I. (Eds.) Springer Nature, 181-200
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Hoppenreijs, L.J.G., Brune, S.E., Biedendieck, R., Krull, R., Boom, R.M. & Keppler, J.K. (2024)
Exploring functionality gain for (recombinant) β-lactoglobulin through production and processing interventions.
Food Bioproc Tech.
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Mingers, T., Mass, V., Barthels, S., Borrero De Acuña, S.M., Biedendieck, R., Cooke, A., Dailey, T., Gerdes, S., Blankenfeld, W., Dailey, H., Warren, M., Jahn, M. & Jahn, D. (2024)
The Alternative Coproporphyrinogen III Oxidase (CgoN) Catalyzes the Oxygen-independent Conversion of Coproporphyrinogen III into Coproporphyrin III.
Front Microbiol. 15, 1378989
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Hintmann, M., Zimbelmann, S., Emde, B., Biedendieck, R. & Jahn, D. (2024)
Antibiotic Effect of High-Power Blue Laser Radiation
Photonics 11, 220
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Brune, S.E., Hoppenreijse, L.J.G., Kühl, T., Lautenbach, V., Walter, J., Peukert, W., Schwarz, K., Imhoff, D., Boom, R.M. Krull, R., Keppler, J.K. & Biedendieck, R. (2023)
Precision fermentation as a route to modify β-lactoglobulin structure through substitution of specific cysteine residues.
Int. Dairy J. 147, 105772
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Weber, J.-N., Minner-Meinen, R., Behnecke, M., Biedendieck, R., Hänsch, V., Hercher, T., van den Hout, L., Knüppel, L., Sivov, S., Schulze, J., Mendel, R.-R., Hänsch, R. & Kaufholdt, D. (2023)
Molybdate transport under the moon light: How the novel AtMOT2 family and GSH-complex formation close gaps in molybdenum homeostasis.
Commun Biol. 6, 801
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Hoppenreijs, L.J.G., Overbeck, A., Brune, S.E., Biedendieck, R., Kwade, A., Krull, R. Boom, R.M. & Keppler, J.K. (2023)
Amyloid-like aggregation of recombinant β-lactoglobulin at pH 3.5 and 7.0: is disulfide bond removal the key to fibrillation?
Int J Biol Macromol. 242, 124855
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Hoppenreijs, L.J.G., Brune, S.E., Biedendieck, R., Krull, R., Boom, R.M. & Keppler, J.K. (2023)
Fibrillation of β-lactoglobulin at pH 2.0: impact of cysteine substitution and disulfide bond reduction
Food Hydrocoll. 141, 108727
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Wichmann, J., Mayer, J., Hintmann, M., Lukat, P., Blankenfeldt, W. & Biedendieck, R. (2023)
Multi-step engineering of a penicillin G acylase for systematic improvement of crystallization efficiency
Cryst Growth Des. 23, 3230–3243
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Zangenehzadeh, S., Agocs, E., Jivani, H., Könemund, L., Neumann, L., Hirschberg, F., Herdan, S., Biedendieck, R., Jahn, D., Roth, B.W., Johannes, H.-H. & Kowalsky, W. (2023)
Bacteria detection in a Kretschmann geometry flow cell at a plasmon-enhanced interface with spectroscopic ellipsometer.
Thin Solid Films., 764, 139583
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Mayer, J., Knuuti, T., Baumgarten, L., Menke, E., Bischoff, L., Bunk, B., & Biedendieck, R. (2022)
Construction and application of a plasmid-based signal peptide library for improved secretion of recombinant proteins with Priestia megaterium.
Microorganisms 10:777
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Könemund, L., Neumann, L., Hirschberg, F., Biedendieck, R., Jahn, D., Johannes, H.-H., & Kowalsky, W. (2022)
Functionalization of an Extended-Gate Field-Effect Transistor (EGFET) for Bacteria Detection.
Sci. Rep., 12, 4397
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Biedendieck, R., Knuuti, T., Moore, S. & Jahn, D. (2021)
The “Beauty in the beast” – the multiple uses of Priestia megaterium in biotechnology
Appl Microbiol Biotechnol 105, 5719-5737
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Kubiak, M., Mayer, J., Kampen, I., Schilde, C. & Biedendieck, R. (2021)
Structure-properties-correlation of cross-linked penicillin G acylase crystals
Crystals 11, 451
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Hofmann, J. D., Biedendieck, R., Michel, A. M., Schomburg, D., Jahn, D. & Neumann-Schaal, M. (2021)
Influence of L-lactate and low glucose concentrations on the metabolism and the toxin formation of Clostridioides difficile,
PLOS ONE, 16, e0244988
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Keppler, J., Heyse, A., Scheidler, E., Uttinger, M., Fitzner, L., Jandt, U., Heyn, T.R., Lautenbach, V., Loch, J., Lohr, J., Kieserling, H., Günther, G., Kempf, E., Grosch, J.-H., Lübbert, C., Lewinski, K., Jahn, D., Peukert, W., Kulozik, U., Drusch, S., Krull, R., Schwarz, K. & Biedendieck, R. (2021)
Towards recombinantly produced milk proteins: Physicochemical and emulsifying properties of engineered whey protein beta-lactoglobulin variants
Food Hydrocoll. 110, 106132
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Kubannek, F., Thiel, S., Bunk, B., Huber, K., Overmann, J., Krewer, U., Biedendieck, R. & Jahn, D (2020)
Performance modelling of the bioelectrochemical glycerol oxidation by a co-culture of Geobacter sulfurreducens and Raoultella electrica
ChemElectroChem. 7:1877-1888
PUBMED: 32161752
Godard, T., Zuehlke, D., Richter, G., Wall, M., Rohde, M., Riedel, K., Poblete-Castro, I., Krull, R. & Biedendieck, R. (2020)
Metabolic rearrangements causing elevated proline and polyhydroxybutyrate accumulation during the osmotic adaptation response of Bacillus megaterium
Front. Bioeng. Biotechnol. 8:47
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Engel, C. E. A., Vorländer, D., Biedendieck, R., Krull, R. & Dohnt, K. (2020)
Quantification of microaerobic growth of Geobacter sulfurreducens.
PLOS One in press
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Thiel, S., Bunk, B., Spröer, C., Overmann, J., Jahn, D. & Biedendieck, R. (2019)
Complete genome sequence of Raoultella electrica 1GB (DSM 102253T), isolated from anodic biofilms of a glucose-fed microbial fuel cell.
Microbiol Resour Announc 8. pii: e00800-19
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Kleinfeldt, L., Gädke, J., Biedendieck, R., Krull, R. & Garnweitner, G. (2019)
Spray-dried hierarchical aggregates of iron oxide nanoparticles and their functionalization for downstream processing in biotechnology.
ACS Omega 4:16300-16308
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Mayer, J., Pippel, J., Günther, G., Müller, C., Lauermann, A., Knuuti, T., Blankenfeldt, W., Jahn, D. & Biedendieck, R. (2019)
Crystal structures and protein engineering of three different penicillin G acylases from Gram-positive bacteria with different thermostability.
Appl Microbiol Biotechnol. 103:7537-7552
PUBMED: 30835726
Münch, K., Münch, R., Biedendieck, R., Jahn, D. & Müller, J. (2019)
Evolutionary model for the unequal segregation of high copy plasmids.
PLOS Comp Biol. 15:e1006724
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Hofmann, J. D., Otto, A., Berges, M., Biedendieck, R., Michel, A.-M., Becher, D., Jahn, D. & Neumann-Schaal, M. (2018)
Metabolic reprogramming of Clostridioides difficile during the stationary phase with the induction of toxin production.
Front Microbiol. 9:1970
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Moore, S.J., MacDonald, J.T., Wienecke, S., Ishwarbhai, A., Tsipa, A., Aw, R., Kylilis, N., Bell, D.J., McClymont, D.W., Jensen, K., Polizzi, K.M., Biedendieck, R. & Freemont, P.S. (2018)
Rapid acquisition and model-based analysis of cell-free transcription-translation reactions from non-model bacteria
Proc Natl Acad Sci USA. 115:E4340-E4349
PUBMED: 28917535
Gädke, J., Thies, J.W., Kleinfeldt, L., Schulze, T., Biedendieck, R., Rustenbeck, I., Garnweitner, G., Krull, R. & Dietzel, A. (2018)
Selective manipulation of superparamagnetic nanoparticles for product purification and microfluidic diagnostics.
Eur J Pharm Biopharm. 126:67-74
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Lakowitz, A., Godard, T., Biedendieck, R. & Krull, R. (2018)
Mini review: Recombinant production of tailored bio-pharmaceuticals in different Bacillus strains and future perspectives
Eur J Pharm Biopharm. 126:27-39
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Gädke, J., Thies, J.-W., Kleinfeldt, L., Kalinin, A., Starke, G., Lakowitz, A., Biedendieck, R., Garnweitner, G., Dietzel, A. & Krull, R. (2017)
Integrated in situ-purification of recombinant proteins from Bacillus megaterium cultivations using SPION in stirred tank reactors.
Biochem Eng J. 126: 58-67
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Blaženović, I., Kind, T., Torbašinović, H., Obrenović, S., Mehta, S.S., Tsugawa, H., Wermuth, T., Schauer, N., Jahn, M., Biedendieck, R., Jahn, D. & Fiehn, O. (2017)
Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy
J Cheminform. 9:32
PUBMED: 28115011
Lakowitz, A., Krull, R. & Biedendieck, R. (2017)
Recombinant production of the antibody fragment D1.3 scFv with different Bacillus strains.
Microb Cell Fact. 16: 14
PUBMED: 27888121
Gädke, J., Kleinfeldt, L., Schubert, C., Rohde, M., Biedendieck, R., Garnweitner, G. & Krull, R. (2017)
In situ affinity purification of His-tagged protein A from Bacillus megaterium cultivation using recyclable superparamagnetic iron oxide nanoparticles.
J Biotechnol. 242: 55-63
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Ferrer, A., Bunk, B., Spröer, C., Biedendieck, R., Valdés, N., Jahn, M., Jahn, D., Orellana, O. & Levican, G. (2016)
Complete genome sequence of the bioleaching bacterium Leptospirillum sp. group II strain CF-1.
J Biotechnol. 222: 21-22.
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A Bacillus megaterium system for the production of recombinant proteins and protein complexes - in "Advances in Experimental Medicine and Biology / Advanced Technologies for Protein Complex Production" (Vega, C., Ed.)
Springer, Berlin, Heidelberg pp. 97-113
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Gerber, A., Kleser, M., Biedendieck, R., Bernhardt, R. & Hannemann, F. (2015)
Functionalized PHB granules provide the basis for the efficient side-chain cleavage of cholesterol and analogs in recombinant Bacillus megaterium.
Microb Cell Fact. 14:107
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Münch, K., Müller, J., Wienecke, S., Bergmann, S., Heyber, S., Biedendieck, R., Münch, R. & Jahn, D. (2015)
Polar fixation of plasmids during recombinant protein production in Bacillus megaterium results in population heterogeneity.
Appl Environ Microbiol. 81:5976-5986
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Finger, C., Gamer, M., Klunkelfuß, S., Bunk, B. & Biedendieck, R. (2015)
Impact of rare codons and the functional coproduction of rate-limiting tRNAs on recombinant protein production in Bacillus megaterium
Appl Microbiol Biotechnol. 99:8999-9010.
Masthoff, I., Gädke, J., Krull, R., Biedendieck, R. & Garnweitner (2014)
Funktionalisierte Nanopartikel - Biokompatible Eisenoxid-Nanopartikel zur in situ-Magnetseparation von Bioprodukten
CITplus 10:46-48.
Schulz, A., Fräger, M., Holtkamp, L., Ronnenberg, J. & Biedendieck, R. (2014)
Bacillus megaterium - ein Produktionssystem für rekombinante Proteine.
BIOspektrum 06:650-651.
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Moore, S.J., Mayer, M.J., Biedendieck, R., Deery, E. & Warren, M. (2014)
Towards a cell factory for vitamin B12 production in Bacillus megaterium: Bypassing of the cobalamin riboswitch control elements.
N Biotechnol. 31:553-561.
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Moore, S.J., Lawrence, A.D., Biedendieck, R., Deery, E., Frank, S., Howard, M.J., Rigby, S.E.J. & Warren, M.J. (2013)
Elucidation of the anaerobic pathway for the corrin component of cobalamin (vitamin B12).
Proc Natl Acad Sci USA 110: 14906-149011.
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Collins, H.F., Biedendieck, R., Leech, H.K., Gray, M., Escalante-Semerena, J.C., McLean, K.J., Munro, A.W., Rigby, S.E., Warren, M.J. & Lawrence, A.D. (2013)
Bacillus megaterium has both a functional BluB protein required for DMB synthesis and a related flavoprotein that forms a stable radical species.
PLoS One 8: e55708.
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Buschke, N., Becker, J., Schäfer, R., Kiefer, P., Biedendieck, R. & Wittmann, C. (2013)
Systems metabolic engineering of xylose utilizing Corynebacterium glutamicum for production of 1,5-diaminopentane.
Biotechnol J. 8: 557-570.
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Korneli, C., David, F., Biedendieck, R., Jahn, D. & Wittmann, C. (2013)
Getting the big beast to work--systems biotechnology of Bacillus megaterium for novel high-value proteins
J Biotechnol. 163: 87-96.
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Moore, S.J., Biedendieck, R., Lawrence, A.D., Deery, E., Howard, M.J., Rigby, S.E.J. & Warren, M.J. (2013)
Characterization of the enzyme CbiH60 involved in anaerobic ring contraction of the cobalamin (vitamin B12) biosynthetic pathway.
J Biol Chem. 288: 297-305.
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Korneli, C., Biedendieck, R., David, F., Jahn, D. & Wittmann, C. (2013)
High yield production of extracellular recombinant levansucrase by Bacillus megaterium.
Appl Microbiol Biotechnol. 97: 3343-3353.
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Klein, J., Leupold, S., Biegler, I., Biedendieck, R., Münch, R. & Jahn, D. (2012)
TLM-Tracker: Software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies.
Bioinformatics 28: 2276-2277.
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Borgmeier, C., Biedendieck, R., Hoffmann, K., Jahn, D. & Meinhardt, F. (2011)
Transcriptome profiling of degU expression reveals unexpected regulatory patterns in Bacillus megaterium and discloses new targets for optimizing expression.
Appl Microbiol Biotechnol. 92: 583-596.
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Eppinger, M., Bunk, B., Johns, M.A., Edirisinghe, J.N., Kutumbaka, K.K., Koenig, S.S.K., Creasy, H.H., Rosovitz, M.J., Riley, D.R., Daugherty, S., Martin, M., Elbourne, L.D.H., Paulsen, I., Biedendieck, R., Braun, C., Grayburn, Dhingra, S., Lukyanchuk, V., Ball, B., ul-Qamar, R., Seibel, J., Bremer, E., Jahn, D., Ravel, J. & Vary, P.S. (2011)
Genome sequences of the biotechnologically important B. megaterium strains QM B1551 and DSM319.
J Bacteriol. 193: 4199-4213.
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Strube, C.P., Homann, A., Gamer, M., Jahn, D., Seibel, J. & Heinz, D.W. (2011)
Polysaccharide synthesis of the levansucrase SACB from Bacillus megaterium is controlled by distinct surface motifs.
J Biol Chem. 286: 17593-17600.
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Biedendieck, R., Borgmeier, C., Bunk, B., Stammen, S., Scherling, C., Meinhardt, F., Wittmann, C. & Jahn, D. (2011)
Systems biology of recombinant protein production using Bacillus megaterium.
Methods Enzymol. 500: 165-195.
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Stammen, S., Schuller, F., Dietrich, S., Gamer, M., Biedendieck, R. & Jahn, D. (2010)
Application of Escherichia coli phage K1E DNA-dependent RNA polymerase for in vitro RNA synthesis and in vivo protein production in Bacillus megaterium.
Appl Microbiol Biotechnol. 88: 529-539.
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Stammen, S., Müller, B.K., Korneli, C., Biedendieck, R., Gamer, M., Franco-Lara, E. & Jahn, D. (2010)
High yield intra- and extracellular protein production using Bacillus megaterium.
Appl Environ Microbiol. 76: 4037-4046.
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Bunk, B., Schulz, A., Stammen, S., Münch, R., Warren, M. J., Rohde, M., Jahn, D. & Biedendieck, R. (2010)
A short story about a big magic bug.
Bioeng Bugs 1: 1-7.
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Biedendieck, R., Malten, M., Barg, H., Bunk, B., Martens, J.-H., Deery, E., Leech, H., Warren, M. J. & Jahn, D. (2010)
Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium.
Microb Biotechnol. 3: 24-37.
Bunk, B., Biedendieck, R., Jahn, D. & Vary, P. S. (2010)
Bacillus megaterium and other Bacilli, Industrial Applications
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Möbius, K., Arias-Cartin, R., Breckau, D., Haennig, A.-L., Riedmann, K., Biedendieck, R., Schroeder, S., Becher, D., Magalon, A., Moser, J., Jahn, M. & Jahn, D. (2010)
Heme biosynthesis is coupled to electron transport chains for energy generation
Proc. Natl. Acad. Sci. USA 107:10436-10441.
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Biedendieck, R., Bunk, B., Fürch, T., Franco-Lara, E., Jahn, M. & Jahn, D. (2010)
Systems Biology of Recombinant Protein Production in Bacillus megaterium - in "Advances in Biochemical Engineering / Biotechnology"
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Springer, Berlin, Heidelberg 120: 133-161.
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Schroeder, S., Lawrence, A.D., Biedendieck, R., Rose, R.S., Deery, E., Graham, R.M., McLean, K.J., Munro, A.W., Rigby, S.E. & Warren, M.J. (2009)
Demonstration that CobG, the monooxygenase associated with the ring contraction process of the aerobic cobalamin (vitamin B12) biosynthetic pathway, contains an Fe-S center and a mononuclear non-heme iron center.
J Biol Chem 284: 4796-4805.
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Beine, R., Valente, A.R., Biedendieck, R., Jahn, D. & Seibel, J. (2009)
Directed optimization of biocatalytic transglycosylation processes by the integration of genetic algorithms and fermentative approaches into a kinetic model.
Proc Biochem. 44: 1103-1114.
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Gamer, M., Froede, D., Biedendieck, R., Stammen, S., Jahn, D. (2009)
A T7 RNA polymerase-dependent gene expression system for Bacillus megaterium.
Appl Microbiol Biotechnol. 82: 1195-203.
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Biedendieck, R., Gamer, M., Jaensch, L., Meyer, S., Rohde, M., Deckwer, W.-D. & Jahn, D. (2007)
A sucrose-inducible promoter system for the intra- and extracellular protein production in Bacillus megaterium.
J Biotechnol. 132: 426-430.
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Homann, A., Biedendieck, R., Goetze, S., Jahn, D. & Seibel, J. (2007)
Insights into polymer versus oligosaccharide synthesis - Mutagenesis and mechanistic studies of a novel levansucrase from Bacillus megaterium.
Biochem J. 407:189-198.
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Bäumchen, C., Roth, A. H. F. J., Biedendieck, R., Malten, M., Follmann, M., Sahm, H., Bringer-Meyer, S. & Jahn, D. (2007)
D-Mannitol production by resting state whole cell biotransformation of D-fructose by heterologous mannitol and formate dehydrogenase genes expression in Bacillus megaterium.
Biotechnol J. 2:1408-1416
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Vary, P. S., Biedendieck, R., Fuerch, T., Meinhardt, F., Rohde, M., Deckwer, W.-D. & Jahn, D. (2007)
Bacillus megaterium - from simple soil bacterium to industrial protein production host.
Appl Microbiol Biotechnol. 76:957-967. Review.
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Jordan, E., Hust, M., Roth, A., Biedendieck, R., Schirrmann, T., Jahn, D. & Duebel, S. (2007)
Production of recombinant antibody fragments in Bacillus megaterium
Microb Cell Fact. 6:2.
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Biedendieck, R., Beine, R., Gamer, M., Jordan, E., Buchholz, K., Seibel, J., Dijkhuizen, L., Malten, M. & Jahn, D. (2007)
Export, purification and activities of affinity tagged Lactobacillus reuteri levansucrase produced by Bacillus megaterium.
Appl Microbiol Biotechnol. 74:1062-1073.
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Biedendieck, R., Yang, Y., Deckwer, W.-D., Malten, M. & Jahn, D. (2007)
Plasmid system for the intracellular production and purification of affinity-tagged proteins in Bacillus megaterium.
Biotechnol Bioeng. 96:525-537.
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Yang, Y., Biedendieck, R., Wang, W., Gamer, M., Malten, M., Jahn, D. & Deckwer, W.-D. (2006)
High yield recombinant penicillin G amidase production and export into the growth medium using Bacillus megaterium.
Microb Cell Fact. 5:36.
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Malten, M., Biedendieck, R., Gamer, M., Drews, A.C., Stammen, S., Buchholz, K., Dijkhuizen, L. & Jahn D (2006)
A Bacillus megaterium plasmid system for the production, export, and one-step purification of affinity-tagged heterologous levansucrase from growth medium.
Appl Environ Microbiol. 72:1677-1679.
Hollmann, R., Malten, M., Biedendieck, R., Yang, Y., Wang, W., Jahn, D. & Deckwer, W.-D. (2006)
Bacillus megaterium als Produktionssystem für rekombinante Proteine
Chemie Ingenieur Technik 78:289-294.